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Defects: F-center in LiF,
a paramagnetic defect G. Mallia
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A simple case: F-center in LiF
Calculation of hyperfine coupling constants with CRYSTAL
Defects are created in crystals when the periodic structure is altered, for instance, by displacing, removing, adding or substituting one or more atoms. Such a local perturbation in the structure causes a modification of the properties of the system, which is often relevant.
Defects may display ability to trap and/or release electrons into states which are very localized. These states can fall inside the band gap of the material: when electrons are trapped or released from this states, energy is emitted or absorbed, and can be seen as sharp peaks in the optical spectra of the material. The trapping of charge and the optical activity have very high impact in the design of laser systems, microelectronic planar devices and optical communication systems.
Defects can also alter the density of the material, specially if structural relaxation of the defects takes place. This influences both the mechanical reliability of the material and its optical properties. A clear and concise book [1] about the point defects is a good starting point for the beginner: definitions and classification, thermodynamics, formation of defects and experimental techniques are explained in a simple way.
Understanding the mechanisms relating defects and change of properties in crystals is a major challenge where computational models are useful tools. In particular, electronic structure calculations can help to evaluate the energies implied in formation, relaxation and migration of defects. The detailed description of the electron density provided by the calculations allows understanding how the chemical bonding is modified around the defect.
When a point defect is created, the translational symmetry of the system is lost. Periodic models can nevertheless be applied to simulate a local defect by constructing a supercell, that is, a set of several unit cells inside which the defect is inserted.
Generation of a supercell: the new lattice vectors length is 5 times the original unit cell ones. Translational symmetry is maintained, the area of the new cell is 25 times the original one.
A defect is inserted at the centre of the cell (it could be anywhere, due to translational invariance). The distance between two point defects determines the entity of their interaction.
Such models should be used with some caution in order to obtain reliable results. The cost of the computation of a model supercell large enough to obtain negligible interaction between defects may be unaffordable.
There are several other methods of modelling localized defects, using clusters or embedded cluster techniques, reviewed in chapter 13 of C. Pisani, editor: Quantum-Mechanical Ab-initio calculation of the Properties of Crystalline Materials, Lecture Notes in Chemistry, Vol. 67, Springer Verlag, Heidelberg, 1996
This tutorial presents the procedure followed to study a simple defect, the F-centre
in LiF, with the CRYSTAL
package.
The study is published in: G. Mallia, R. Orlando, C. Roetti, P. Ugliengo, R. Dovesi,
Phys. Rev. B 63, 235102 (2001).
Electrons bound to a negative ion vacancy are known as F-centres. Because of their optical activity, F centres are also called colour centres. References [4,5] present experimental investigation of F-centre in Alkali Halides and in LiF in particular.
F-center in LiF is an electron bound to a fluorine vacancy.
The interaction between the unpaired electron at the anion vacancy and the nuclear spins of surrounding atoms is studied up to the seventh nearest neighbours by mean of the electron spin resonance (ESR).
CRYSTAL is a suitable tool to model this kind of defect for the following reasons:
Modelling of the system consists of two steps:
The space group of LiF is Fm-3m, the asymmetric unit includes two atoms in special positions of multiplicity 1:
F (0,0,0) Li (1/2,1/2,1/2)
or exchanging the coordinates
Li (0,0,0) F (1/2,1/2,1/2)
From the point of view of physics the two possibilities are equivalent, but not from the computational point of view for this study. The defect is an anion vacancy (a Fluorine atom missing): if the Fluorine atom is at the origin, when a supercell is created and the F atom at the origin is removed to generate the defect, the number of symmetry operators is not reduced. See "F-centre formation".
See "Geometry input", "Basis set input" , "Hamiltonian and SCF for input instructions.
Li and F basis sets as in the site www.crystal.unito.it
Default values for all computational parameters. Restricted closed shell Hartree-Fock Hamiltonian.
Mixing of Fock matrices is chosen to speed up SCF convergence.
| LiF
- bulk
CRYSTAL 0 0 0 225 4.02 2 9 0.0 0.0 0.0 3 0.5 0.5 0.5 ENDG |
Title of the job
Dimensionality of the system Crystallographic information (3D only) Space Group number Lattice parameter Number of non equivalent atoms Conventional atomic number, fractionary coordinates End of the geometry input section |
|
| 3 2
0 0 6 2. 1. 840.0 0.0264 217.5 0.0085 72.3 0.0335 19.66 0.1824 5.044 0.6379 1.5 1. 0 1 1 1. 1. 0.525 1.0 1.0 9 4 0 0 7 2. 1. 13770. 0.000877 1590. 0.00915 326.5 0.0486 91.66 0.1691 30.46 0.3708 11.5 0.41649 4.76 0.1306 0 1 3 7. 1. 19. -0.1094 0.1244 4.53 -0.1289 0.5323 1.387 1. 1. 0 1 1 0. 1. 0.437 1. 1. 0 1 1 0. 1. 0.137 1. 1. 99 0 ENDBS |
Li: Z,
number of shells
type of base, type of shell, NG, occupation n.,scale factor Exponent, contraction coefficient F: Z, number of shells
End of the basis set input |
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SHRINK
8 8 SCFDIR FMIXING 30 ENDSCF |
Shrinking factors
in k-space 30% mixing of Fock matrix cycle i and i-1 (default in CRYSTAL14) End of SCF input |
Exercise 1: Run CRYSTAL with file LiF.d12 as an input (command: runcry LiF - output in LiF.out)
The default SCF guess is a superposition of atomic densities. The number of electrons attributed to each atom is the sum of shell charges. In this case we have chosen a neutral atomic configuration for the SCF atomic guess:
9 electrons for F 3 electrons for Li
Mulliken analysis of the wave function at the end of SCF gives:
9.977 electrons for F 2.023 electrons for Li
The crystal is fully ionic: the choice on an atomic (not ionic, closer to the real one) configuration maintains neutrality of the cell when the defect is created by removing a Fluorine atom.
A supercell is defined by an expansion matrix,
given in input, to multiply the lattice parameters matrix (see keyword SUPERCEL
in CRYSTAL User's Manual). The expansion
matrix to obtain a supercell of given volume must be chosen so as not to reduce the number of symmetry operators.
crystal checks the compatibility of the symmetry operators of the original cell with the new
cell, and removes the symmetry operators not compatible with the structure. The number of symmetry operators can be
reduced, not increased.
Hints to define an expansion matrix of LiF primitive cell:
Expansion matrix: SUPERCEL i 0 0 0 i 0 0 0 i |
i volume LiF - atoms/cell name 2 8 x V 16 S16 3 27 x V 54 S54 4 64 x V 128 S128 |
Expansion matrix: from primitive S2 to crystallographic S8: SUPERCEL -1 1 1 1 -1 1 1 1 -1 |
x 2 |
Expansion matrix: from primitive S2 to S64: SUPERCEL -2 2 2 2 -2 2 2 2 -2 |
A larger supercell is obtained by multiplying the translational vectors of the conventional cell by an integer i; if i=2, the supercell contains 64 atoms (S82 = S64); the shape of the cell is cubic.
| T | x | E64 | = | E32 |
-1/2 1/2 1/2 1/2 -1/2 1/2 1/2 1/2 -1/2 |
x |
-2 2 2 2 -2 2 2 2 -2 |
= |
3 -1 -1 -1 3 -1 -1 -1 3 |
If we multiply the translational vectors of S32 by an integer i=2, S256 is obtained. The expansion matrix to obtain S32 and S256 are as follows:
Expansion matrix: from primitive S2 to S32: SUPERCEL 3 -1 -1 -1 3 -1 -1 -1 3 |
x 2 |
Expansion matrix: from primitive S2 to S256: SUPERCEL 6 -2 -2 -2 6 -2 -2 -2 6 |
Similarly, this expansion matrix can be obtained by multiplying the matrix T with the expansion matrix for S512, which is a simple cubic cell like S64. The generic term representing supercells like S32 and S256 is S4(2i)3 with i=1,2,... They are rhombohedral with all the three angles \(\alpha\), \(\beta\) and \(\gamma\) nearly equal to 109.5�.
Supercells up to 32 atoms will be studied. The exercises will use a 16 atoms supercell, to obtain results quickly.
Cells bigger than S32 are not
required because (see reference [6]:
Exercise 2:
volume x 4 volume x 8 volume x 16
8 atoms 16 atoms 32 atoms
SUPERCEL SUPERCEL SUPERCEL
-1 1 1 2 0 0 3 -1 -1
1 -1 1 0 2 0 -1 3 -1
1 1 -1 0 0 2 -1 -1 3
CRYSTAL input and output for S8
CRYSTAL input and output for S16
Exercise 3:
The size of the reciprocal lattice cell reduces with increasing size of the
direct lattice cell. The sampling in k space requires less and less points, at
the limit 1 k point for very large supercell.
The Pack-Monkhorst net shrinking factor (see "SCF")
ranges from 8 to 2. The value of IS must be checked to guarantee stability
of the energy value within the SCF convergence tolerance.
Run CRYSTAL for the supercell S16 (remove TESTGEOM) with IS = 8, 4, 2 and check the energy value with respect to the SCF convergence threshold
The first essential requirement of supercell method is the size-consistency. Each extensive property for a n-cells system must be equal to n times the corresponding value obtained for 1 cell system.
Exercise 4: Verify that the energy per LiF pair is equal up to the SCF convergence threshold for the supercells S8, S16
Exercise 5: Use the wave function obtained in Exercise 2 and run a properties calculation (runprop script) in order to compute the band structure of the perfect crystal for S16 along the path identified by the k-points \(\Gamma\)-X-W.
The coordinates of the k-points are:
\(\Gamma\) (0 0 0)
X (1/2 0 1/2)
W (1/2 1/4 3/4)
In the properties input the coordinates must be inserted in integer format, in units of the shrinking factor (second input datum):
\(\Gamma\) (0 0 0)
X (2 0 2)
W (2 1 3)
The band range chosen includes the valence bands and the first 4 virtual bands (96 electrons per cell, 32 core electrons, RHF hamiltonian: 48 occupied bands, 16 core bands)
The input file (with extension d3, if the script runprop is used) is:
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BAND
Band Structure of 16 Atoms Supercell 2 4 30 17 52 1 0 0 0 0 2 0 2 2 0 2 2 1 3 END |
Keyword to compute the band structure
Title number of segments, shrinking factor, # points, band range, ... Coordinates of k-points extremes of first segment: \(\Gamma\)-X Coordinates of k-points extremes of second segment: X-W |
Visualize the band structure by using the band script and the appropriate control file.
Density of states in the energy range of the bands previously considered is computed executing properties with the following input:
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NEWK 4 8 0 0 DOSS 3 100 -10 -20 2 12 0 -1.5 1.5 -1 1 -1 2 -1 9 END |
Keyword to compute hamiltonian
eigenvectors
Shrinking factors See CRYSTAL User's Manual Keyword to compute density of states 2 projections, 100 points, energy range defined in input, plot, # Legendre pol, no printing energy range (hartree) first projection: all AOs of atom 1, Fluorine (label 1) second projection: all AOs of atom 2, Fluorine (label 2) third projection: all AOs of atom 9, Lithium (label 9) end of properties input |
To identify the "label" of the atoms see the output:
*******************************************************************************
1 9 F 4 0.000 0.000 0.000 1.370E-01 9.977
2 9 F 4 2.010 2.010 0.000 1.370E-01 9.977
3 9 F 4 2.010 0.000 2.010 1.370E-01 9.977
4 9 F 4 4.020 2.010 2.010 1.370E-01 9.977
5 9 F 4 0.000 2.010 2.010 1.370E-01 9.977
6 9 F 4 2.010 4.020 2.010 1.370E-01 9.977
7 9 F 4 2.010 2.010 4.020 1.370E-01 9.977
8 9 F 4 4.020 4.020 4.020 1.370E-01 9.977
9 3 LI 2 0.000 0.000 -2.010 5.250E-01 2.023
10 3 LI 2 -2.010 -2.010 -2.010 5.250E-01 2.023
11 3 LI 2 2.010 0.000 0.000 5.250E-01 2.023
12 3 LI 2 0.000 -2.010 0.000 5.250E-01 2.023
13 3 LI 2 0.000 2.010 0.000 5.250E-01 2.023
14 3 LI 2 -2.010 0.000 0.000 5.250E-01 2.023
15 3 LI 2 2.010 2.010 2.010 5.250E-01 2.023
16 3 LI 2 0.000 0.000 2.010 5.250E-01 2.023
*******************************************************************************
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In the perfect crystal at site 1 and 2 there are equivalent atoms, fluorine.
At the end of calculation the following band structure and density of states should be obtained.

The system is insulator, with band gap of 0.801 hartree (21.795 eV).
The band width (BWIDTH keyword, see
CRYSTAL User's Manual) of all valence bands is very narrow, indicating that
there is little overlap of the ionic charge distributions. The
valence bands are mainly Fluorine.
BAND LIMITS FROM BAND 17 TO BAND 52 BAND 17 EMIN -1.466479E+00 EMAX -1.450493E+00 BAND 18 EMIN -1.456663E+00 EMAX -1.445848E+00 BAND 19 EMIN -1.451432E+00 EMAX -1.440662E+00 BAND 20 EMIN -1.450493E+00 EMAX -1.440662E+00 BAND 21 EMIN -1.446320E+00 EMAX -1.438974E+00 BAND 22 EMIN -1.445502E+00 EMAX -1.434563E+00 BAND 23 EMIN -1.440662E+00 EMAX -1.434563E+00 BAND 24 EMIN -1.440662E+00 EMAX -1.434563E+00 BAND 25 EMIN -6.318031E-01 EMAX -5.887851E-01 BAND 26 EMIN -6.318031E-01 EMAX -5.887851E-01 BAND 27 EMIN -6.318031E-01 EMAX -5.878500E-01 BAND 28 EMIN -6.151087E-01 EMAX -5.869528E-01 BAND 29 EMIN -6.151087E-01 EMAX -5.804994E-01 BAND 30 EMIN -6.151087E-01 EMAX -5.786599E-01 BAND 31 EMIN -6.151087E-01 EMAX -5.588019E-01 BAND 32 EMIN -5.829380E-01 EMAX -5.442011E-01 BAND 33 EMIN -5.746830E-01 EMAX -5.442011E-01 BAND 34 EMIN -5.703980E-01 EMAX -5.394351E-01 BAND 35 EMIN -5.703980E-01 EMAX -5.362066E-01 BAND 36 EMIN -5.703980E-01 EMAX -5.349269E-01 BAND 37 EMIN -5.559182E-01 EMAX -5.303390E-01 BAND 38 EMIN -5.559182E-01 EMAX -5.080550E-01 BAND 39 EMIN -5.360308E-01 EMAX -5.080550E-01 BAND 40 EMIN -5.346110E-01 EMAX -5.080550E-01 BAND 41 EMIN -5.330866E-01 EMAX -5.080550E-01 BAND 42 EMIN -5.288004E-01 EMAX -5.079541E-01 BAND 43 EMIN -5.261544E-01 EMAX -5.077259E-01 BAND 44 EMIN -5.261544E-01 EMAX -5.074979E-01 BAND 45 EMIN -5.196737E-01 EMAX -5.013619E-01 BAND 46 EMIN -5.151926E-01 EMAX -4.963703E-01 BAND 47 EMIN -5.151926E-01 EMAX -4.963703E-01 BAND 48 EMIN -5.088824E-01 EMAX -4.960240E-01 BAND 49 EMIN 3.043997E-01 EMAX 4.128116E-01 BAND 50 EMIN 3.680616E-01 EMAX 4.423662E-01 BAND 51 EMIN 4.069737E-01 EMAX 4.832150E-01 BAND 52 EMIN 4.127770E-01 EMAX 4.832150E-01 |
Exercise 6: Compare the band structure of supercell S16 with the band structure of LiF bulk, crystallographic cell.
Note - The same path \(\Gamma\)-X-W
of S16 for BAND properties can be used, taking into account
that there are 2 atoms, 12 electrons, 4 core electrons in the cell: 6 bands are
occupied (2 core bands).
Tha band range must be modified: 17 -> 3,
52 -> 10:
|
BAND
Band Structure 2 4 30 3 10 1 0 0 0 0 2 0 2 2 0 2 2 1 3 END |
Keyword to compute the band structure
Title 2 segments, .. Coordinates of k-points: \(\Gamma\)-X X-W |

|
PPAN
ECHG 0 100 COORDINA 0. 4.02 4.02 0. -4.02 4.02 0. -4.02 -4.02 END END |
Keyword to perform Mulliken population analysis
Keyword to compute charge density in a grid of points Order of the derivative Number of points Definition of the grid - see CRYSTAL User's Manual Cartesian coordinates point A Cartesian coordinates point B Cartesian coordinates point C End of ECHG input End of properties input |
A window in the plane (001), which contains the vacancy site, is used to compute the charge density in a grid of points. Looking at the output obtained, the ionicity of the system is confirmed by Mulliken population analysis:
ALPHA+BETA ELECTRONS
MULLIKEN POPULATION ANALYSIS - NO. OF ELECTRONS 96.000000
ATOM Z CHARGE A.O. POPULATION
1 F 9 9.977 1.999 0.809 1.028 1.028 1.028 1.027 0.728 0.728
0.728 0.155 0.239 0.239 0.239
. . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . .
9 LI 3 2.023 1.615 0.372 0.012 0.012 0.012
. . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . .
OVERLAP POPULATION CONDENSED TO ATOMS FOR FIRST 6 NEIGHBORS
ATOM A 1 F ATOM B CELL R(AB)/AU R(AB)/ANG OVPOP(AB)
9 LI ( 0 0 0) 3.798 2.010 -0.001
2 F ( 0 0 0) 5.372 2.843 -0.027
. . . . . . . . . . . . . . . . . . . . . . . . .
ATOM A 2 F ATOM B CELL R(AB)/AU R(AB)/ANG OVPOP(AB)
10 LI ( 0 0 1) 3.798 2.010 -0.001
1 F ( 0 0 0) 5.372 2.843 -0.027
. . . . . . . . . . . . . . . . . . . . . . . . .
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The charge density of the perfect crystal shows almost spherical distributions, not overlapping.
Comparison between the density in the crystal and the density as sum of the atomic densities confirms that there is no build up of charge between neighbouring atoms.
An F-centre is an electron bound to a negative ion vacancy. Modelling a F-centre requires definition of a crystal geometry with an "isolated" anion vacancy, and of a basis set allowing build up of electron charge in the vacancy during the SCF process.
To model the isolated defect with CRYSTAL, a periodic program, the supercell technique is adopted: a supercell large enough to avoid defects interaction is generated, and then the defect is created.
The keyword GHOSTS of CRYSTAL package (second input block, basis set definition) allows generation of a vacancy, leaving at the site the variational basis set necessary to allow build up of charge.
The keyword GHOSTS removes electrons and nuclear charge from the selected atomic site, leaving the basis set centred at the atomic position.
A model obtained with removal of an atom (ATOMREMO) is inadequate, as the basis set associated with that centre is removed as well. There is no variational freedom to allow build up of electron charge at that site.
In the supercell S16 there are 8 Lithium (3 electrons in the neutral atom) and 8 Fluorine atoms (9 electrons in the neutral atom), for a total of 96 electrons, corresponding to 48 occupied bands (RHF hamiltonian). When a Fluorine atom is removed, in the supercell there are 8 Li, 7 F, for a total of 87 electrons. The odd number of electrons requires independent treatment of \(\alpha\) and \(\beta\) electrons, allowed by Unrestricted Hartree Fock method, chosen by the keyword UHF (third input block, "Hamiltonian &c")
When the charge distribution of \(\alpha\) and \(\beta\) electrons is different, the resulting spin density is responsible for the magnetic properties of the system. To drive the SCF process towards a given state, it is possible to force the program to start SCF with a defined difference between the number of \(\alpha\) and the number of \(\beta\) electrons. This trick should be used only at the beginning of the calculation, in order to allow the electron density to relax properly.
The keyword SPINLOCK (input block 3, "Hamiltonian & SCF") allows definition of the difference (n\(\alpha\)-n\(\beta\)) for a given number of SCF cycles.
Exercise 7: In the previous input for S16
insert the keyword GHOSTS, selecting the fluorine in the origin and run CRYSTAL.
Remember to insert the keyword UHF in the method input and
the SPINLOCK directives in SCF part, because the unpaired
electron causes a different occupancy of \(\alpha\) and \(\beta\) levels .
The last part of the input deck follows and changes
with respects to the previous input for S16
(exercise 2) are highlighted:
|
. . .
. 99 0 |
. . . . . . . last record of basis set input - optional keywords follow |
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GHOSTS
1 1 |
Keyword to transform atoms into ghosts
Number of atom to replaced by a ghost atom Label of the atom |
| ENDBS | |
| UHF | Unrestricted Hartree-Fock |
|
4 0 4
FMIXING 30 |
Shrinking factors Mixing of Fock matrices 30% mixing |
|
SPINLOCK
1 1 |
Keyword to lock the spin difference
n\(\alpha\) - n\(\beta\) electrons, number of SCF cycles to maintain the difference |
|
PPAN
ENDSCF |
Population analysys at the end of SCF end of SCF input block |
The removal of a Fluorine atom located at (0,0,0) did not modify the number of symmetry operators, there is 1 symmetry allowed degree of freedom for geometry optimization (see below).
Exercise 8: Repeat exercise 7 by modifying in basis set input the electronic configuration of atoms to obtain ions Li+ and F-. The program stops with the error message "UNIT CELL NOT NEUTRAL": GHOSTS removed the Fluorine centre, corresponding to 10 electrons and 9 nuclear charges.
Exercise 9: The 9 Fluorine atoms in the supercell are equivalent, but as the translational symmetry within the supercell is not recognized, the symmetry of the 9 sites may be different. The keyword ATOMSYMM (input block 1, Geometry input ) allows symmetry analysis at the atomic sites.
Repeat exercise 7: insert the keyword ATOMSYMM in geometry input (and TESTGEOM to stop the program after geometry step) and run the two cases:
1) F (0,0,0)
2) F (-1/2,-1/2,0)
**** ATOMS BELONGING TO THE SUPERCELL LABEL AT.NO. COORDINATES (ANGSTROM AND FRACTIONARY) 1 9 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2 9 -2.0100 -2.0100 0.0000 0.0000 0.0000 -0.5000 3 9 -2.0100 0.0000 -2.0100 0.0000 -0.5000 0.0000 4 9 -4.0200 -2.0100 -2.0100 0.0000 -0.5000 -0.5000 5 9 0.0000 -2.0100 -2.0100 -0.5000 0.0000 0.0000 6 9 -2.0100 -4.0200 -2.0100 -0.5000 0.0000 -0.5000 7 9 -2.0100 -2.0100 -4.0200 -0.5000 -0.5000 0.0000 8 9 -4.0200 -4.0200 -4.0200 -0.5000 -0.5000 -0.5000 9 3 0.0000 0.0000 -2.0100 -0.2500 -0.2500 0.2500 10 3 -2.0100 -2.0100 -2.0100 -0.2500 -0.2500 -0.2500 11 3 2.0100 0.0000 0.0000 -0.2500 0.2500 0.2500 12 3 0.0000 -2.0100 0.0000 -0.2500 0.2500 -0.2500 13 3 0.0000 2.0100 0.0000 0.2500 -0.2500 0.2500 14 3 -2.0100 0.0000 0.0000 0.2500 -0.2500 -0.2500 15 3 2.0100 2.0100 2.0100 0.2500 0.2500 0.2500 16 3 0.0000 0.0000 2.0100 0.2500 0.2500 -0.2500 **************************** SUPERCELL GENERATED **************************** ********************************************************************* ATOMIC SITE SYMMETRIES ********************************************************************* ATOM 1 ATOMIC NUMBER 9 - NUMBER OF SYMMOPS WHICH DO NOT MOVE THE ATOM 48 SEQUENCE NUMBERS OF THE SYMMOPS 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 NO EQUIVALENT ATOMS ATOM 7 ATOMIC NUMBER 9 - NUMBER OF SYMMOPS WHICH DO NOT MOVE THE ATOM 8 SEQUENCE NUMBERS OF THE SYMMOPS 1 2 13 14 25 26 37 38 NUMBER OF ATOMS EQUIVALENT BY SYMMETRY 5 SEQUENCE NUMBERS OF THESE ATOMS 2 4 6 5 3 SEQUENCE NUMBERS OF THE CORRESPONDING SYMMOPS 3 5 6 7 10 |
Creation of the F-centre using the keyword GHOSTS leaves at the vacancy site the basis set of the atom removed. This basis set may be oversize to describe a single electron charge distribution.
The keyword ATOMSUBS (input block 1, Geometry input ) offers an alternative way to generate a vacancy, with a basis set associated to the vacancy site.
ATOMSUBS
substitutes with different atoms selected atoms. The basis set of the new atoms
must be defined.
If the conventional atomic number of the new atom is 0 (symbol XX), no nuclear
charge is attributed to that site, and no electrons should be attributed through
the basis set input
Example - F-centre creation from perfect bulk supercell using ATOMSUBS
1) Geometry - input block 1
|
SUPERCELL
2.0 0.0 0.0 0.0 2.0 0.0 0.0 0.0 2.0 |
|
|
ATOMSUBS
1 1 0 |
Keyword to substitute atoms
Number of atom to be substituted Label of the atom to be substituted; new atom conventional atomic number 0 |
| ENDG |
2) Basis set - input block 2 - insert the following data:
|
0 2 0 1 1 0. 1. 0.437 1. 1. 0 1 1 0. 1.0 0.137 1. 1. |
conventional atomic number; number of shells two shells are associated to the vacancy site, with exponents equivalent to the outer shells of Fluorine atom removed basis set |
Exercise 10: Run CRYSTAL for F-centre in LiF specifying the ATOMSUBS directive and using only the two most diffuse sp shells of fluorine basis set.
Exercise 11: Test the effect of a 1 shell (s and sp type) basis set at the vacancy site.
The characteristics of the wave function describing the unpaired electron clearly emerge from the data reported in the following table, where the effect of the modification of the basis set centred at the anion vacancy is explored. See table from reference [6]
| HF | case | basis set type | \(\Delta\)E |
(electrons) |
(102 e/bohr3) |
(102 e/bohr3) |
(102 e/bohr3) |
| 1 | 7-311(s,sp,sp,sp) | 0.00 | 0.91 | 2.19 | 2.25 | 1.88 | |
| 2 | 11(sp,sp) | 0.437 0.137 | +0.10 | 0.90 | 1.94 | 2.26 | 1.88 |
| 3 | 1(sp) | 0.093 | -0.50 | 1.05 | 2.08 | 2.25 | 1.84 |
| 4 | 1(s) | 0.093 | -0.09 | 1.09 | 2.08 | 2.24 | 1.77 |
Effect of the basis set adopted for describing the F-center
on total energy, on the Mulliken charge
and on the value of the function
,
spin density, computed at the site of the vacancy XX and at the position of
nearest and next nearest neighbours. \(\Delta\)E
(in mhartree) is the energy difference with respect to CASE 1, which refers
to a calculation with the fluorine anion basis set centred at XX. In CASE
2 only the two most diffuse sp shells of the F- basis set are kept. In
CASE 3 only the most diffuse sp shell is kept and its exponent is reoptimized.
In CASE 4 the defect basis set is simplified to a single s function.
As a defect is created, the local perturbation breaks the equilibrium between the different forces inside the crystal. A relaxation takes place, involving several atoms surrounding the defect, to find a new balance between repulsive and attractive forces.
Structural relaxation
modifies geometry, and as consequence total energy, and electronic
properties.
The magnitude of these changes depends
on the nature of the material.
Relaxation around F-centre must be taken into account. The neighbours analysis gives:
|
NEIGHBORS OF THE NON-EQUIVALENT ATOMS
N = NUMBER OF NEIGHBORS AT DISTANCE R ATOM N R/ANG R/AU NEIGHBORS (ATOM LABELS AND CELL INDICES) 1 XX 6 2.0100 3.7984 16 LI 0 0 0 14 LI 0 0 0 13 LI 0 0 0 12 LI 0 0 0 11 LI 0 0 0 9 LI 0 0 0 1 XX 12 2.8426 5.3717 7 F 1 0 0 7 F 0 1 0 6 F 0 0 1 6 F 1 0 0 5 F 0 0 0 5 F 1 0 0 4 F 0 0 1 4 F 0 1 0 3 F 0 0 0 3 F 0 1 0 2 F 0 0 0 2 F 0 0 1 1 XX 8 3.4814 6.5789 15 LI 0 0 0 15 LI -1 0 0 15 LI 0-1 0 15 LI 0 0-1 10 LI 0 0 0 10 LI 1 0 0 10 LI 0 1 0 10 LI 0 0 1 |
The F-center (XX) is surrounded by 6 Li ions (the nearest neighbours) and by 12 F ions (the next nearest neighbours).
The keyword SYMMDIR (input block 1, Geometry input ) allows analysis of the symmetrized directions allowed in geometry optimization. Only one direction is allowed, corresponding to the relaxation of the position of the stars of neighbours around the defect.
SYMMETRY ALLOWED DIRECTION 1 ATOM 9 (Z= 3) 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.4082483 0.0000000 0.0000000 0.0000000 -0.4082483 0.0000000 0.0000000 0.0000000 0.4082483 0.0000000 0.0000000 -0.4082483 0.0000000 0.4082483 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 -0.4082483 SYMMETRY ALLOWED INTERNAL DEGREE(S) OF FREEDOM: 1 |
Displacement of atoms 9, 11, 12, 13,14, 16,
the first stars of defect neighbours, corresponds to the unique degree of
freedom in a 16 atoms supercell.
In a 32 atoms supercell the first 2 stars of neighbours are allowed to be
displaced in geometry optimization, without loss of symmetry.
The keyword OPTGEOM ("Geometry
optimization") allows geometry optimization, according to the degrees of
freedom symmetry allowed. After optimization, the neighbours analysis gives:
NEIGHBORS OF THE NON-EQUIVALENT ATOMS
N = NUMBER OF NEIGHBORS AT DISTANCE R
ATOM N R/ANG R/AU NEIGHBORS (ATOM LABELS AND CELL INDICES)
1 XX 6 2.0329 3.8416 9 LI 0 0 0 11 LI 0 0 0 12 LI 0 0 0
13 LI 0 0 0 14 LI 0 0 0 16 LI 0 0 0
1 XX 12 2.8426 5.3717 2 F 0 0 0 2 F 0 0-1 3 F 0 0 0
3 F 0-1 0 4 F 0 0-1 4 F 0-1 0
5 F 0 0 0 5 F -1 0 0 6 F 0 0-1
6 F -1 0 0 7 F -1 0 0 7 F 0-1 0
1 XX 8 3.4814 6.5789 10 LI 0 0 0 10 LI 1 0 0 10 LI 0 1 0
10 LI 0 0 1 15 LI 0 0 0 15 LI -1 0 0
15 LI 0-1 0 15 LI 0 0-1
|
Comparison between the given outputs shows that the six Li+ first neighbours relax by 0.02 Angstrom away from the center of the defect in agreement with Ref [6]. In this paper, the total energy of the defective system has been optimised with respect to the position of the first and second sphere of neighbours in a S32. In the table below the first line refers to the case in which ions have not been displaced, the second one to the relaxation of the six Li+ first neighbours and the last one to the further relaxation of the second sphere of ions. The six Li+ first neighbours relax far away from the centre of defect, because they feel the reciprocal electrostatic repulsion. The six F- second neighbours move also far away along radial direction with respect to the defect, but in this case the displacement of the anions is very small since the perturbation caused by the defect almost does not propagate to the second shell of neighbours. The optimization of Li+ position determines an energy gain of nearly 1 mhartree, instead the F- relaxation is negligible (0.2 mhartree) with respects to the non relaxed energy.
Given the small magnitude of the energies involved in the relaxation of the F-centre, we conclude that the perturbation caused by this defect is small. This is mainly due to the ionic character of LiF, since the main interaction in this type of materials is determined by an equilibrium between the attractive and repulsive long-range interactions between anions and cations. Both types of ions have charges several times higher than that of the trapped electron, and therefore the effect of the presence of the defect is relatively small.
Data from reference [6].
| RELAXED ATOM | \(\Delta\)d | \(\Delta\)E |
| - | - | 0.00000 |
| Li100 | 0.030 | -0.00070 |
| F110 | 0.008 | -0.00086 |
The formation energy
En f of the F-centre defect is
defined as:
Enf = En-1d
+ EF - Enp
where
En-1d
= energy of the defective system
Enp =
energy of perfect system
EF =
energy of the isolated fluorine atom.
Charge and mass balance must be preserved in the equation.
Exercise 12: Calculate the formation energy of F-centre using the results obtained with supercells of 16 atoms (output of exercises 2 and 7). The energy of the isolated atom should be computed with an atomic basis set, with appropriate diffuse functions. The keyword ATOMHF (third input block) controls a crystal run with no periodic calculation: the wave functions of the irreducible atoms in the cell are computed by the atomic program inserted in crystal; the program then stops.
To compute properties of the defective system edit the input (BAND, DOSS) used for the perfect crystal , to take into account that there are 87 electrons, 44 occupied alpha bands and 43 occupied beta bands, 15 core bands for each spin..
One of the most relevant effects caused by the presence of a defect is the appearance of localized states in the band gap of the material. Trapping or releasing electrons to and from these states requires less energy than to excite electrons from the top of the valence band to the bottom of the conduction band.
\(\alpha\) and \(\beta\) electrons are described by different set of orbitals. Two band structures (drawn by continuous and dashed lines) are obtained, for the majority and minority spin states. The shape of the bands is similar to the bands of the perfect system, but a new band appear in the band gap; this is the state associated to the F-centre. Projected density of states confirm the attribution of the band in the gap to the defect.
BWIDTH prints the band width of selected bands.
ANBD allows analysis of the principal AO's components of selected bands. Submit the following input:
|
NEWK
4 8 0 0 BWIDTH 0 0 ANBD 1 1 0.01 1 44 END |
Keyword to compute eigenvectors (they are not saved at the end of SCF)
Shrinking factors No Fermi energy calculation, no printing Keyword to print the band witdh of selected bands "0 0" means: valence + first 4 virtual bands Keyword to perform analysis of principal AO components of selected bands Number of k points selected, number of bands Threshold to ignore coefficients Sequence number of the k point(s) selected Sequence number of the band(s) selected |
ALPHA ELECTRONS
BAND LIMITS FROM BAND 16 TO BAND 48
BAND 16 EMIN -1.469412E+00 EMAX -1.457189E+00
BAND 17 EMIN -1.459120E+00 EMAX -1.452635E+00
BAND 18 EMIN -1.456492E+00 EMAX -1.447512E+00
BAND 19 EMIN -1.453093E+00 EMAX -1.447512E+00
BAND 20 EMIN -1.451948E+00 EMAX -1.444787E+00
BAND 21 EMIN -1.447213E+00 EMAX -1.441488E+00
BAND 22 EMIN -1.446108E+00 EMAX -1.441488E+00
BAND 23 EMIN -6.323549E-01 EMAX -5.968586E-01
BAND 24 EMIN -6.323549E-01 EMAX -5.936570E-01
BAND 25 EMIN -6.323549E-01 EMAX -5.936570E-01
BAND 26 EMIN -6.207675E-01 EMAX -5.876354E-01
BAND 27 EMIN -6.039257E-01 EMAX -5.838262E-01
BAND 28 EMIN -6.039257E-01 EMAX -5.829773E-01
BAND 29 EMIN -6.039257E-01 EMAX -5.689758E-01
BAND 30 EMIN -5.808023E-01 EMAX -5.496637E-01
BAND 31 EMIN -5.808023E-01 EMAX -5.496637E-01
BAND 32 EMIN -5.632076E-01 EMAX -5.456283E-01
BAND 33 EMIN -5.616351E-01 EMAX -5.359277E-01
BAND 34 EMIN -5.596968E-01 EMAX -5.350725E-01
BAND 35 EMIN -5.596968E-01 EMAX -5.350725E-01
BAND 36 EMIN -5.460655E-01 EMAX -5.138960E-01
BAND 37 EMIN -5.422544E-01 EMAX -5.138960E-01
BAND 38 EMIN -5.323224E-01 EMAX -5.134964E-01
BAND 39 EMIN -5.317481E-01 EMAX -5.134964E-01
BAND 40 EMIN -5.263183E-01 EMAX -5.134964E-01
BAND 41 EMIN -5.200227E-01 EMAX -5.046798E-01
BAND 42 EMIN -5.177353E-01 EMAX -5.046798E-01
BAND 43 EMIN -5.154251E-01 EMAX -5.046798E-01
BAND 44 EMIN -1.810962E-01 EMAX -1.334811E-01
BAND 45 EMIN 2.957130E-01 EMAX 3.367300E-01
BAND 46 EMIN 3.212653E-01 EMAX 4.057058E-01
BAND 47 EMIN 3.485757E-01 EMAX 4.057058E-01
BAND 48 EMIN 3.813605E-01 EMAX 4.223566E-01
BETA ELECTRONS
BAND LIMITS FROM BAND 16 TO BAND 48
BAND 16 EMIN -1.468045E+00 EMAX -1.455173E+00
BAND 17 EMIN -1.457007E+00 EMAX -1.450095E+00
BAND 18 EMIN -1.454712E+00 EMAX -1.445496E+00
BAND 19 EMIN -1.450561E+00 EMAX -1.444908E+00
BAND 20 EMIN -1.449560E+00 EMAX -1.443599E+00
BAND 21 EMIN -1.444863E+00 EMAX -1.438800E+00
BAND 22 EMIN -1.444863E+00 EMAX -1.438800E+00
BAND 23 EMIN -6.314273E-01 EMAX -5.940887E-01
BAND 24 EMIN -6.314273E-01 EMAX -5.925618E-01
BAND 25 EMIN -6.314273E-01 EMAX -5.919625E-01
BAND 26 EMIN -6.200823E-01 EMAX -5.855450E-01
BAND 27 EMIN -5.985977E-01 EMAX -5.787253E-01
BAND 28 EMIN -5.985977E-01 EMAX -5.787253E-01
BAND 29 EMIN -5.985977E-01 EMAX -5.635124E-01
BAND 30 EMIN -5.798698E-01 EMAX -5.473294E-01
BAND 31 EMIN -5.760465E-01 EMAX -5.473294E-01
BAND 32 EMIN -5.590414E-01 EMAX -5.426076E-01
BAND 33 EMIN -5.590414E-01 EMAX -5.342512E-01
BAND 34 EMIN -5.541856E-01 EMAX -5.332294E-01
BAND 35 EMIN -5.541856E-01 EMAX -5.332294E-01
BAND 36 EMIN -5.454173E-01 EMAX -5.131146E-01
BAND 37 EMIN -5.378406E-01 EMAX -5.131146E-01
BAND 38 EMIN -5.317572E-01 EMAX -5.107263E-01
BAND 39 EMIN -5.268313E-01 EMAX -5.107263E-01
BAND 40 EMIN -5.249740E-01 EMAX -5.107263E-01
BAND 41 EMIN -5.181217E-01 EMAX -5.039255E-01
BAND 42 EMIN -5.168710E-01 EMAX -5.039255E-01
BAND 43 EMIN -5.133662E-01 EMAX -5.039255E-01
BAND 44 EMIN 1.974520E-01 EMAX 2.481626E-01
BAND 45 EMIN 3.380283E-01 EMAX 3.674521E-01
BAND 46 EMIN 3.674521E-01 EMAX 4.187525E-01
BAND 47 EMIN 3.920745E-01 EMAX 4.232495E-01
BAND 48 EMIN 4.114568E-01 EMAX 4.390525E-01
|
\(\alpha\) band 44, at -0.181096 hartree (occupied), and \(\beta\) band 44, at 0.197452 (not occupied) are analysed:
BAND 44 E(A.U.)= -0.181096
AO 2 S XX 1 RE= 0.01652
AO 6 S XX 1 RE= -0.13232
AO 10 S XX 1 RE= 1.06897
. . . . . . . . . . . . . . . .
BAND 44 E(A.U.)= 0.197452
AO 2 S XX 1 RE= 0.03423
AO 6 S XX 1 RE= -0.23607
AO 10 S XX 1 RE= 0.98791
. . . . . . . . . . . . . . . .
|
The bands in the gap are due to the defect.
Mulliken population analysis and charge and spin density maps can be computed submitting the same (no reference to the number of electrons) input deck used for the perfect crystal, using the defective systems wave function. See "How to run crystal".
Data are computed with reference to total and spin density.
MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
ALPHA+BETA ELECTRONS
MULLIKEN POPULATION ANALYSIS - NO. OF ELECTRONS 87.000000
ATOM Z CHARGE SHELL POPULATION
1 XX 0 0.911 0.000 0.004 0.000 0.000 0.000 -0.082 -0.001 -0.001
-0.001 0.997 -0.002 -0.002 -0.002
2 F 9 9.988 1.999 0.810 1.027 1.027 1.029 1.027 0.728 0.728
0.727 0.161 0.243 0.243 0.240
3 F 9 9.988 1.999 0.810 1.027 1.029 1.027 1.027 0.728 0.727
0.728 0.161 0.243 0.240 0.243
4 F 9 9.988 1.999 0.810 1.029 1.027 1.027 1.027 0.727 0.728
0.728 0.161 0.240 0.243 0.243
5 F 9 9.988 1.999 0.810 1.029 1.027 1.027 1.027 0.727 0.728
0.728 0.161 0.240 0.243 0.243
6 F 9 9.988 1.999 0.810 1.027 1.029 1.027 1.027 0.728 0.727
0.728 0.161 0.243 0.240 0.243
7 F 9 9.988 1.999 0.810 1.027 1.027 1.029 1.027 0.728 0.728
0.727 0.161 0.243 0.243 0.240
8 F 9 9.973 1.999 0.809 1.028 1.028 1.028 1.027 0.728 0.728
0.728 0.155 0.239 0.239 0.239
9 LI 3 2.023 1.615 0.371 0.012 0.012 0.013
10 LI 3 2.023 1.615 0.372 0.012 0.012 0.012
11 LI 3 2.023 1.615 0.371 0.013 0.012 0.012
12 LI 3 2.023 1.615 0.371 0.012 0.013 0.012
13 LI 3 2.023 1.615 0.371 0.012 0.013 0.012
14 LI 3 2.023 1.615 0.371 0.013 0.012 0.012
15 LI 3 2.023 1.615 0.372 0.012 0.012 0.012
16 LI 3 2.023 1.615 0.371 0.012 0.012 0.013
ATOM Z CHARGE SHELL POPULATION
1 XX 0 0.911 0.000 0.004 -0.084 0.990
2 F 9 9.988 1.999 3.893 3.209 0.887
3 F 9 9.988 1.999 3.893 3.209 0.887
4 F 9 9.988 1.999 3.893 3.209 0.887
5 F 9 9.988 1.999 3.893 3.209 0.887
6 F 9 9.988 1.999 3.893 3.209 0.887
7 F 9 9.988 1.999 3.893 3.209 0.887
8 F 9 9.973 1.999 3.894 3.210 0.871
9 LI 3 2.023 1.615 0.408
10 LI 3 2.023 1.615 0.408
11 LI 3 2.023 1.615 0.408
12 LI 3 2.023 1.615 0.408
13 LI 3 2.023 1.615 0.408
14 LI 3 2.023 1.615 0.408
15 LI 3 2.023 1.615 0.408
16 LI 3 2.023 1.615 0.408
OVERLAP POPULATION CONDENSED TO ATOMS FOR FIRST 6 NEIGHBORS
ATOM A 1 XX ATOM B CELL R(AB)/AU R(AB)/ANG OVPOP(AB)
9 LI ( 0 0 0) 3.798 2.010 -0.003
2 F ( 0 0 0) 5.372 2.843 -0.007
. . . . . . . . .
ATOM A 2 F ATOM B CELL R(AB)/AU R(AB)/ANG OVPOP(AB)
10 LI ( 0 0 1) 3.798 2.010 -0.001
1 XX ( 0 0 0) 5.372 2.843 -0.007
3 F ( 0 0 0) 5.372 2.843 -0.028
. . . . . . . . .
ATOM A 9 LI ATOM B CELL R(AB)/AU R(AB)/ANG OVPOP(AB)
1 XX ( 0 0 0) 3.798 2.010 -0.003
3 F ( 0 -1 0) 3.798 2.010 -0.001
10 LI ( 0 0 0) 5.372 2.843 0.000
MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
ALPHA-BETA ELECTRONS
MULLIKEN POPULATION ANALYSIS - NO. OF ELECTRONS 1.000000
ATOM Z CHARGE SHELL POPULATION
1 XX 0 0.969 0.000 0.005 0.000 0.000 0.000 -0.084 0.000 0.000
0.000 1.015 0.011 0.011 0.011
2 F 9 0.001 0.000 0.002 0.004 0.004 0.000 0.000 0.000 0.000
0.000 0.002 -0.005 -0.005 0.001
3 F 9 0.001 0.000 0.002 0.004 0.000 0.004 0.000 0.000 0.000
0.000 0.002 -0.005 0.001 -0.005
4 F 9 0.001 0.000 0.002 0.000 0.004 0.004 0.000 0.000 0.000
0.000 0.002 0.001 -0.005 -0.005
5 F 9 0.001 0.000 0.002 0.000 0.004 0.004 0.000 0.000 0.000
0.000 0.002 0.001 -0.005 -0.005
6 F 9 0.001 0.000 0.002 0.004 0.000 0.004 0.000 0.000 0.000
0.000 0.002 -0.005 0.001 -0.005
7 F 9 0.001 0.000 0.002 0.004 0.004 0.000 0.000 0.000 0.000
0.000 0.002 -0.005 -0.005 0.001
8 F 9 -0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
0.000 0.000 0.000 0.000 0.000
9 LI 3 0.004 0.001 -0.003 0.000 0.000 0.006
10 LI 3 0.000 0.000 0.000 0.000 0.000 0.000
11 LI 3 0.004 0.001 -0.003 0.006 0.000 0.000
12 LI 3 0.004 0.001 -0.003 0.000 0.006 0.000
13 LI 3 0.004 0.001 -0.003 0.000 0.006 0.000
14 LI 3 0.004 0.001 -0.003 0.006 0.000 0.000
15 LI 3 0.000 0.000 0.000 0.000 0.000 0.000
16 LI 3 0.004 0.001 -0.003 0.000 0.000 0.006
|
According to Mulliken population analysis one electro is localized at the vacancy site.
The presence of the unpaired electron can be also revealed by charge and spin
density maps.
Same input as for perfect crystal.
The maps above correspond to a charge density (left) and a spin density (right).
The lowest level in the map to the left is the highest level in the map to the right.
There is spin density at the vacancy site and at the neighbouring atoms.
A better understanding of the spin density is given by plot of the spin density along a path crossing vacancy and Lithium atoms, and a path crossing vacancy and Fluorine atoms.
In ECHG input, when the coordinates of point B and C coincide, a x-y file is written, with the name RHOLINE.DAT. A blank line separate total density and spin density data. It is saved by the script runprop as filename.RHOLINE
A hyperfine structure of the EPR spectra can be detected, due to the interaction between the unpaired spin and the spin of neighbouring nuclei. This information gives better insight into the structure of the defect. The isotropic hyperfine interaction is caused by the non-zero probability of an electron being in the position of a given nuclei. This is only true for the s type orbitals (they are the only ones which do not become zero at the origin). The spherical symmetry of this type of orbitals causes the contribution to be isotropic. The anisotropic contribution is due to the presence of higher order poles, and it is indicative of the deformation of the electronic density with respect to the spherical distribution.
The data obtained from the analysis of the hyperfine interaction can also be simulated in an electronic structure calculation, once the electron density distribution is known. In CRYSTAL, the following directives should be provided:
|
ISOTROPIC
UNIQUE ANISOTROPIC UNIQUE END |
Keyword to evaluate the hyperfine electron-nucleus isotropic component
Hyperfine interaction is computed for all non equivalent atoms in the cell Keyword to evaluate the anisotropic hyperfine interaction tensor The anisotropic tensor is evaluated for all non equivalent atoms End of ANISOTROPIC input |
The spin of the adjacent nuclei is assumed to be known, and is kept in a database inside the code.
Exercise 13: Run a properties calculation with the input above
using S16 and S32 wave function of the defective system
Compare the isotropic and anisotropic hyperfine
coupling constants for S16 and S32.
S16 wave function gives the following results:
*******************************************************************************
SPIN DENSITY AT THE NUCLEAR POSITIONS
*******************************************************************************
POINT ATOM X(AU) Y(AU) Z(AU) BOHR**(-3)
1 1 XX 0.0000 0.0000 0.0000 0.021452
2 2 F 3.7983 3.7983 0.0000 0.036803
3 8 F 7.5967 7.5967 7.5967 0.000836
4 9 LI 0.0000 0.0000 -3.7983 0.022533
5 10 LI -3.7983 -3.7983 -3.7983 0.000450
*******************************************************************************
HYPERFINE COUPLING CONSTANTS (AN)
*******************************************************************************
POINT ATOM MASS N0 NUCLEAR AN (MT) AN (MHZ) AN (CM**(-1))
G FACTOR
2 2 F 19 5.2577710 0.55253E+01 0.15485E+03 0.51651E-02
3 8 F 19 5.2577710 0.12550E+00 0.35172E+01 0.11732E-03
4 9 LI 6 0.8220575 0.52893E+00 0.14823E+02 0.49445E-03
4 9 LI 7 2.1709770 0.13969E+01 0.39147E+02 0.13058E-02
5 10 LI 6 0.8220575 0.10557E-01 0.29587E+00 0.98693E-05
5 10 LI 7 2.1709770 0.27881E-01 0.78137E+00 0.26064E-04
CONVERSION FACTORS
AN (MILLI T) 28.554470 * GN * P(SPIN) (BOHR**(-3))
AN (MHZ) 28.024940 * AN (MILLI T)
AN (CM**(-1)) 0.3335641E-04 * AN (MHZ)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT ISOTROPIC TELAPSE 1.08 TCPU 0.06
|
The atom labeled as ( 9 LI ) is one of the nearest neighbors of the F-centre; the experimental value of Fermi contact, determined for the 7Li, is equal to 39.06 MHz [4,5], the calculated one is 39.147 MHz (0.39147E+02).
The anisotropy of hyperfine interaction is described by
T tensor evaluated at nuclear position,
T is diagonalized and its eigenvalues
are printed:
*******************************************************************************
HYPERFINE ELECTRON-NUCLEAR SPIN INTERACTION TENSOR
ANISOTROPIC COMPONENTS - THE TENSOR IS TRACELESS
*******************************************************************************
POINT ATOM MASS NO NUCLEAR G FACTOR
TENSOR IN PRINCIPAL AXES SYSTEM
AA 1.528725E-17 BB 4.716279E-18 CC -2.000353E-17
POINT ATOM MASS NO NUCLEAR G FACTOR
2 2 F 19 5.2577710
TENSOR IN PRINCIPAL AXES SYSTEM
AA 8.725216E-02 BB -4.296771E-02 CC -4.428445E-02
POINT ATOM MASS NO NUCLEAR G FACTOR
3 8 F 19 5.2577710
TENSOR IN PRINCIPAL AXES SYSTEM
AA -3.252607E-19 BB -3.089976E-18 CC 3.415237E-18
POINT ATOM MASS NO NUCLEAR G FACTOR
4 9 LI 6 0.8220575
4 9 LI 7 2.1709770
TENSOR IN PRINCIPAL AXES SYSTEM
AA -1.431286E-02 BB -1.431286E-02 CC 2.862571E-02
POINT ATOM MASS NO NUCLEAR G FACTOR
5 10 LI 6 0.8220575
5 10 LI 7 2.1709770
TENSOR IN PRINCIPAL AXES SYSTEM
AA 3.794708E-18 BB -1.084202E-19 CC -3.686287E-18
*******************************************************************************
THE COMPONENTS OF THE TENSOR IN MILLITESLA ARE OBTAINED BY MULTIPLYING
THE COMPUTED ONES BY 3.4066697*NUCLEAR G FACTOR
*******************************************************************************
OTHER CONVERSION FACTORS
T (MHZ) = 28.024940 * T (MILLI T)
T (CM**(-1)) = 0.3335641E-04 * T (MHZ)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT ANISOTROPI TELAPSE 1.16 TCPU 0.14
|
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